Target folder: /home/hflavio/Google-drive/workshops_and_presentations/2024-09_OTN/workshop_materials/dataset/2014
Timestamp: 2024-07-24 12:39:19.59901
Number of target tags: 40
Number of listed receivers: 7 (of which 0 had no detections)
Data time range: 2014-04-29 01:34:31 to 2014-05-16 20:44:29 (Europe/London).
Percentage of post-release valid detections: 100%
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Arrays with the same background belong to the same section. Release sites are marked with “R.S.”. Arrays connected with an arrow indicate that the animals can only pass in one direction.
| Station.name | Latitude | Longitude | Array | Section | Standard.name | x.29902 | y.29902 |
|---|---|---|---|---|---|---|---|
| Layde | 55.20140 | -6.524300 | A1 | River | St.1 | 294010 | 440363 |
| Sewage works | 55.21040 | -6.531700 | A2 | River | St.2 | 293518 | 441355 |
| Bushfoot | 55.21960 | -6.531900 | A3 | River | St.3 | 293484 | 442379 |
| Portballintrae 2 | 55.22156 | -6.541634 | A4 | Sea | St.4 | 292860 | 442584 |
| Portballintrae 3 | 55.22433 | -6.541750 | A4 | Sea | St.5 | 292846 | 442892 |
| Portballintrae 4 | 55.22632 | -6.538917 | A4 | Sea | St.6 | 293022 | 443117 |
| Portballintrae 5 | 55.22797 | -6.536100 | A4 | Sea | St.7 | 293197 | 443304 |
| Receiver | Array | Station.name | Standard.name | Start | Stop |
|---|---|---|---|---|---|
| 102880 | A4 | Portballintrae 2 | St.4 | 2014-04-29 | 2015-05-16 23:59:59 |
| 102884 | A4 | Portballintrae 3 | St.5 | 2014-04-29 | 2015-05-16 23:59:59 |
| 102885 | A4 | Portballintrae 4 | St.6 | 2014-04-29 | 2015-05-16 23:59:59 |
| 102886 | A4 | Portballintrae 5 | St.7 | 2014-04-29 | 2015-05-16 23:59:59 |
| 107086 | A2 | Sewage works | St.2 | 2014-04-29 | 2015-05-16 23:59:59 |
| 107160 | A3 | Bushfoot | St.3 | 2014-04-29 | 2015-05-16 23:59:59 |
| 111472 | A1 | Layde | St.1 | 2014-04-29 | 2015-05-16 23:59:59 |
| Station.name | Latitude | Longitude | Array | Type | Standard.name | x.29902 | y.29902 | n.All |
|---|---|---|---|---|---|---|---|---|
| Cross | 55.10060 | -6.405336 | A1 | Release | Cross | 301841 | 429309 | 12 |
| Trap | 55.20271 | -6.523100 | A2 | Release | Trap | 294084 | 440510 | 28 |
overall.CJS object. Auxiliary information can also be found in the matrices and arrays objects.
advEfficiency(results$overall.CJS) to obtain beta-drawn efficiency distributions (replace results with the name of the object where you saved the analysis).
Individuals detected and estimated
| A1 | A2 | A3 | A4 | |
|---|---|---|---|---|
| detected | 10 | 32 | 31 | 28 |
| here plus on peers | 10 | 31 | 28 | - |
| not here but on peers | 1 | 0 | 0 | - |
| known | 11 | 32 | 31 | 28 |
| estimated | 11 | 32 | 31 | - |
Array efficiency
Note: These values already include any intra-array efficiency estimates that have been requested.
| A1 | A2 | A3 | A4 | |
|---|---|---|---|---|
| efficiency | 90.9% | 100% | 100% | - |
Warning: 'success.arrays' was not defined. Assuming success if the tags are last detected at array A4.
Warning: 'speed.warning'/'speed.error' were not set, skipping speed checks.
Warning: 'inactive.warning'/'inactive.error' were not set, skipping inactivity checks.
No comments were included during the analysis.
section.overview object.
| Total | Disap..in.River | Migrated.to.Sea | Disap..in.Sea | Succeeded | |
|---|---|---|---|---|---|
| All | 40 | 9 | 31 | 3 | 28 |
status.df object (‘Very.last.array’ column).
Zoom in or open the figure in a new tab to clearly read the text within each circle.
overall.CJS object, and the data used in the tables is stored in the group.overview object. You can find detailed progressions per release site in the release.overview object.
Group: All
| Release | A1 | A2 | A3 | A4 | |
|---|---|---|---|---|---|
| detected | 40 | 10 | 32 | 31 | 28 |
| here plus on peers | - | 10 | 31 | 28 | - |
| not here but on peers | - | 1 | 0 | 0 | - |
| known | 40 | 11 | 32 | 31 | 28 |
| estimated | - | 11 | 32 | 31 | - |
| difference | - | 0 | 0 | 0 | - |
plotTimes() function.
times object.
options(actel.circular.scale = "linear") before running your analyses.
status.df object.
detections.y.axis argument.
section.order argument.
plotDetections() function.
plotMoves() function.
detections and movements objects (and respective valid counterparts).
Actel R package report.
Version: 1.3.0.9007
Target folder: /home/hflavio/Google-drive/workshops_and_presentations/2024-09_OTN/workshop_materials/dataset/2014
Timestamp: 2024-07-24 12:39:19.59901
Function: migration()
M: 'report' option has been activated.
M: Importing data. This process may take a while.
M: No Code.space column was found in the biometrics. Assigning code spaces based on detections.
M: No 'Group' column found in the biometrics. Assigning all animals to group 'All'.
M: Number of target tags: 40.
M: Matching detections with deployment periods.
M: Number of ALS: 7 (of which 0 had no detections)
M: Data time range: 2014-04-29 01:34:31 to 2014-05-16 20:44:29 (Europe/London).
M: File 'distances.csv' found, activating speed calculations.
M: Data successfully imported!
Warning: 'success.arrays' was not defined. Assuming success if the tags are last detected at array A4.
M: Creating movement records for the valid tags.
M: Checking movement events quality.
Warning: 'speed.warning'/'speed.error' were not set, skipping speed checks.
Warning: 'inactive.warning'/'inactive.error' were not set, skipping inactivity checks.
M: Compiling and checking section movements for the valid tags.
M: Filtering valid array movements.
M: Filtering valid section movements.
M: Compiling migration timetable.
M: Compiling summary information tables.
M: Calculating array efficiency.
M: Saving results as 'actel_migration_results.RData'.
M: Producing the report.
M: Drawing individual detection graphics.
M: Analysis completed!
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User interventions:
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y # save strays?
y # save results?
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Migration function call:
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migration(tz = 'Europe/London', section.order = NULL, datapack = NULL, success.arrays = NULL, max.interval = 60, min.total.detections = 2, min.per.event = c(1, 1), start.time = NULL, stop.time = NULL, speed.method = 'last to first', speed.warning = NULL, speed.error = NULL, jump.warning = 2, jump.error = 3, inactive.warning = NULL, inactive.error = NULL, exclude.tags = NULL, override = NULL, report = TRUE, auto.open = TRUE, discard.orphans = FALSE, discard.first = NULL, save.detections = FALSE, if.last.skip.section = TRUE, replicates = NULL, disregard.parallels = TRUE, GUI = 'needed', save.tables.locally = FALSE, print.releases = TRUE, detections.y.axis = 'auto')
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